December 10, 2024

Using genomics to explore the epidemiology of vancomycin resistance in a sewage system

September 19, 2024

Genomic profiling of Antarctic geothermal microbiomes using long-read, Hi-C, and single-cell techniques

August 20, 2024

Detection of mobile colistin resistance genes mcr-9.1 and mcr-10.1 in Enterobacter asburiae from Ecuadorian children

July 17, 2024

Proxi-RIMS-seq2 applied to native microbiomes uncovers hundreds of known and novel m5C methyltransferase specificities.

May 11, 2024

Highly accurate metagenome-assembled genomes from human gut microbiota using long-read assembly, binning, and consolidation methods

March 2, 2024

Exploring Cereal Metagenomics: Unravelling Microbial Communities for Improved Food Security

January 2, 2024

Identifying Mobile Genetic Elements in the Ruminal Microbiome of Nellore Cattle: An Initial Investigation

November 30, 2023

Detection of rare plasmid hosts using a targeted Hi-C approach

October 26, 2023

Arbuscular mycorrhizal fungi heterokaryons have two nuclear populations with distinct roles in host–plant interactions

September 11, 2023

Recovery of 52 bacterial genomes from the fecal microbiome of the domestic cat (Felis catus) using Hi-C proximity ligation and shotgun metagenomics

July 7, 2023

Development of a field-deployable qPCR assay for real-time pest monitoring in algal cultivation systems

June 21, 2023

A chromosome-scale genome assembly of the grape powdery mildew pathogen Erysiphe necator reveals its genomic architecture and previously unknown features of its biology

May 8, 2023

Catch me if you can: capturing microbial community transformation by extracellular DNA using Hi-C sequencing

April 6, 2023

Viruses interact with hosts that span distantly related microbial domains in dense hydrothermal mats

January 9, 2023

Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities

November 29, 2022

Extensive somatic nuclear exchanges shape global populations of the wheat leaf rust pathogen Puccinia triticina

November 2, 2022

Chromosome-level assembly of the Phytophthora agathidicida genome reveals adaptation in effector gene families

August 29, 2022

Characterization of Comammox Bacteria in Wastewater Secondary Treatment Systems

May 11, 2022

Antimicrobial resistance genes predict plasmid generalism and network structure in wastewater

April 13, 2022

Litter Commensal Bacteria Can Limit the Horizontal Gene Transfer of Antimicrobial Resistance to Salmonella in Chickens

March 17, 2022

Novel canine high-quality metagenome-assembled genomes, prophages and host-associated plasmids provided by long-read metagenomics together with Hi-C proximity ligation

January 28, 2022

A chromosome-level, fully phased genome assembly of the oat crown rust fungus Puccinia coronata f. sp. avenae: a resource to enable comparative genomics in the cereal rusts

January 3, 2022

Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities

September 24, 2021

Danofloxacin Treatment Alters the Diversity and Resistome Profile of Gut Microbiota in Calves

September 13, 2021

Prokaryotic viruses impact functional microorganisms in nutrient removal and carbon cycle in wastewater treatment plants

July 16, 2021

Hi-C deconvolution of a textile dye–related microbiome reveals novel taxonomic landscapes and links phenotypic potential to individual genomes

April 3, 2021

Competition is a determinant of multidrug resistant plasmid acquisition in Salmonella

February 19, 2021

Tracking Reservoirs of Antimicrobial Resistance Genes in a Complex Microbial Community Using Metagenomic Hi-C: The Case of Bovine Digital Dermatitis

December 15, 2020

Roundup causes embryonic development failure and alters metabolic pathways and gut microbiota functionality in non-target species

November 27, 2020

Genome Sequence of Monilinia vaccinii-corymbosi Sheds Light on Mummy Berry Disease Infection of Blueberry and Mating Type

July 21, 2020

Long read assembly of the pandemic strain of Austropuccinia psidii (myrtle rust) reveals an unusually large (gigabase sized) and repetitive fungal genome »

May 14, 2020

Phased Diploid Genome Sequence for the Fast-Growing Microalga Picochlorum celeri »

January 21, 2020

Degradation of recalcitrant polyurethane and xenobiotic additives by a selected landfill microbial community and its biodegradative potential revealed by proximity ligation-based metagenomic analysis »

August 2, 2019

Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation »

May 30, 2019

Linking the Resistome and Plasmidome to the Microbiome »

October 24, 2018

Repeat elements organise 3D genome structure and mediate transcription in the filamentous fungus Epichloë festucae »

November 8, 2017

Identification of a novel interspecific hybrid yeast from a metagenomic spontaneously inoculated beer sample using Hi‐C »

December 6, 2024

Host-specific viral predation network on coral reefs

September 18, 2024

Decoupling of strain- and intrastrain-level interactions of microbiomes in a sponge holobiont

July 22, 2024

Distributions, interactions, and dynamics of prokaryotes and phages in a hybrid biological wastewater treatment system

June 6, 2024

Exploration of mobile genetic elements in the ruminal microbiome of Nellore cattle

March 21, 2024

Analysis and culturing of the prototypic crAssphage reveals a phage-plasmid lifestyle

January 16, 2024

Host- plasmid network structure in wastewater is linked to antimicrobial resistance genes

December 6, 2023

Hi-C assembled genomes of estuarine populations reveal virus-microbe associations and a broad interaction range of a cyanophage

November 23, 2023

Hi-C metagenome sequencing reveals soil phage–host interactions

September 22, 2023

Integrating chromatin conformation information in a self-supervised learning model improves metagenome binning

July 10, 2023

Plasmids, a molecular cornerstone of antimicrobial resistance in the One Health era

July 5, 2023

Virus impacted community adaptation in oligotrophic groundwater environment revealed by Hi-C coupled metagenomic and viromic study

June 14, 2023

Productive viral infections in oligotrophic marine waters

April 10, 2023

The soil-borne white root rot pathogen Rosellinia necatrix expresses antimicrobial proteins during host colonization

January 18, 2023

Resolving the haplotypes of arbuscular mycorrhizal fungi highlights the role of two nuclear populations in host interactions

December 1, 2022

Widespread, human-associated redondoviruses infect the commensal protozoan Entamoeba gingivalis

November 18, 2022

Recovery of high-quality genomes from the fecal microbiome of the domestic cat (Felis catus) using Hi-C proximity ligation

October 13, 2022

Genome-centric analysis of short and long read metagenomes reveals uncharacterized microbiome diversity in Southeast Asians

August 18, 2022

Localization of Epigenetic Markers in Leishmania Chromatin

April 26, 2022

A chromosome-scale genome assembly of the tomato pathogen Cladosporium fulvum reveals a compartmentalized genome architecture and the presence of a dispensable chromosome

March 25, 2022

Physical separation of haplotypes in dikaryons allows benchmarking of phasing accuracy in Nanopore and HiFi assemblies with Hi-C data

February 15, 2022

A Chromosome Scale Assembly of an Australian Puccinia striiformis f. sp. tritici Isolate of the PstS1 Lineage

January 17, 2022

Proximity ligation strategy for the genomic reconstruction of microbial communities associated with the ectoparasite Caligus rogercresseyi

October 17, 2021

Enrofloxacin Alters Fecal Microbiota and Resistome Irrespective of Its Dose in Calves

September 15, 2021

The stem rust fungus Puccinia graminis f. sp. tritici induces centromeric small RNAs during late infection that are associated with genome-wide DNA methylation

August 24, 2021

Horizontal Gene Transfer Is the Main Driver of Antimicrobial Resistance in Broiler Chicks Infected with Salmonella enterica Serovar Heidelberg

June 14, 2021

Accurate viral genome reconstruction and host assignment with proximity-ligation sequencing

February 22, 2021

The interspecific fungal hybrid Verticillium longisporum displays sub-genome-specific gene expression

December 17, 2020

Tracking Double-Stranded DNA Bacteriophages and Their Hosts in a Deep Freshwater Lake by Integrating Metagenomics and The Hi-C Technique

December 8, 2020

Horizontal chromosome transfer and independent evolution drive diversification in Fusarium oxysporum f. sp. fragariae.

September 8, 2020

Repetitive Elements Contribute to the Diversity and Evolution of Centromeres in the Fungal Genus Verticillium »

June 1, 2020

Draft genome sequence of “Candidatus Afipia apatlaquensis” sp. nov., IBT-C3, a potential strain for decolorization of textile dyes »

February 6, 2020

Metagenomic Hi-C of a healthy human fecal microbiome transplant donor »

August 2, 2019

Emergence of the Ug99 lineage of the wheat stem rust pathogen through somatic hybridisation »

July 17, 2019

Vampirovibrio chlorellavorus draft genome sequence, annotation, and preliminary characterization of pathogenicity determinants »

February 7, 2019

Chromosome rearrangements shape the diversification of secondary metabolism in the cyclosporin producing fungus Tolypocladium inflatum »

February 28, 2018

Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen »

October 5, 2017

Hi-C deconvolution of a human gut microbiome yields high-quality draft genomes and reveals plasmid-genome interactions »